Farmer Wiki¶

Welcome to wiki documentation hub. This wiki serves as a centralized knowledge base for Farmer members working with HPC systems and computational resources.

1. About Us¶

Our group focuses on computational research leveraging high-performance computing infrastructure. We primarily work with the Saga HPC cluster at SIGMA2/NRIS for large-scale computational tasks.

Team Information¶

Project Leads: Tuyen, Dat
Team Members: Binh, Son, Vy, Ty

What we do¶

Develop and optimize deep learning models for genome language tasks
Sequence to function prediction using deep learning
Sequence to gene expression modeling
Variant impact prediction
Single cell and multi-omics data modeling
Bioinformatics tool development

2. Lab Resources¶

Computing Infrastructure¶

Primary System: Saga HPC Cluster (SIGMA2/NRIS)
Access: Project account nn9780k

GitHub Repository¶

GitHub Repo: farmer-vn
Wandb: wandb account

Quick Links¶

Resource	Description	Link
Saga Login	SSH access to cluster	`ssh username@saga.sigma2.no`
Project Directory	Shared project space	`/cluster/projects/nn9780k`
SIGMA2 Docs	Official documentation	documentation.sigma2.no

3. Getting Started¶

New to the lab? Follow these steps:

3.1 Get Access¶

Request Saga account through project leader [Tuyen]
Request access to GitHub repo [Dat]

3.2 Saga Setup ¶

Set up two-factor authentication
Configure SSH keys
Click here to read Saga guide for setup instructions

3.3 Start Computing¶

Submit test jobs to familiarize yourself with SLURM
Monitor resource usage with dusage and cost
Follow best practices outlined in our guides

4. Resources Statistics¶

Current Resources

Storage Quota: Check with dusage -p nn9780k
CPU Hours: Check with cost -p nn9780k
Active Projects: [List your current projects]

5. External Resources¶

Official Documentation¶

Useful Tools¶

Last updated: December 24, 2025